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    <import class="org.concord.sensor.state.OTInterfaceManager" />
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    <import class="org.concord.sensor.state.OTSensorRequest" />
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    <import class="org.concord.otrunk.biologica.OTOrganism" />
    <import class="org.concord.otrunk.biologica.OTStaticOrganism" />
    <import class="org.concord.otrunk.biologica.OTChromosome" />
    <import class="org.concord.otrunk.biologica.OTChromosomeZoom" />
    <import class="org.concord.otrunk.biologica.OTBreedOffspring" />
    <import class="org.concord.otrunk.biologica.OTPedigree" />
    <import class="org.concord.otrunk.biologica.OTMultipleOrganism" />
    <import class="org.concord.otrunk.biologica.OTFamily" />
    <import class="org.concord.otrunk.biologica.qtl.OTQTLSimulation" />
    <import class="org.concord.otrunk.biologica.qtl.OTQTL" />
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    <import class="org.concord.datagraph.state.OTDataAxis" />
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    <import class="org.concord.otrunk.ui.OTObjectSet" />
    <import class="org.concord.otrunk.biologica.OTSex" />
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    <import class="org.concord.datagraph.state.OTDataPointRuler" />
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        <!--        <OTInclude href="imports/udl-view-bundle-mod.otml" /> -->
        <OTInclude href="imports/geniquest-view-bundle.otml" />
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                <OTWorld speciesPath="org/concord/biologica/worlds/dragonmarkers-plates.xml" />
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            <OTOrganism id="7850b6e9-64fa-11dd-88f8-3390a456ed3b" name="WingsEx2Male" alleles="b:w,a:w" sex="0" allowFatalCharacteristic="false">
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                <OTWorld speciesPath="org/concord/biologica/worlds/dragonmarkers-plates.xml" />
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            <OTOrganism id="f9868606-64f9-11dd-88f8-3390a456ed3b" name="WingsEx1Male" alleles="b:W,a:w" sex="0" allowFatalCharacteristic="false">
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                <OTWorld speciesPath="org/concord/biologica/worlds/dragonmarkers-plates.xml" />
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            <OTOrganism id="9039c71b-64fa-11dd-88f8-3390a456ed3b" name="WingsEx1Female" alleles="b:w,a:w" sex="1" allowFatalCharacteristic="false">
              <world>
                <OTWorld speciesPath="org/concord/biologica/worlds/dragonmarkers-plates.xml" />
              </world>
            </OTOrganism>
            <object refid="${femaleOrganism}" />
            <object refid="${maleOrganism}" />
            <object refid="${femaleOrganism2}" />
            <object refid="${maleOrganism2}" />
            <object refid="${femaleOrganism3}" />
            <object refid="${maleOrganism3}" />
            <object refid="${femaleOrganism4}" />
            <object refid="${maleOrganism4}" />
            <object refid="ec63a7dd-6517-11dd-bd45-d9d11cbf97e7" />
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              <world>
                <OTWorld speciesPath="org/concord/biologica/worlds/dragonmarkers-plates.xml" />
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              <world>
                <OTWorld speciesPath="org/concord/biologica/worlds/dragonmarkers-plates.xml" />
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            <OTOrganism name="Lucenne" sex="1" allowFatalCharacteristic="false" alleles="b:h,a:H,b:S,a:S,b:W,a:w,b:L,a:L,b:t,a:t,b:p,a:p,b:F,a:f,b:a,a:a,b:B,a:B">
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              <world>
                <OTWorld speciesPath="org/concord/biologica/worlds/dragonmarkers-plates.xml" />
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            </OTOrganism>
            <object refid="${femaleStrainOrganism}" />
            <object refid="${maleStrainOrganism}" />
            <OTOrganism local_id="samplemale_strain">
              <name>male</name>
              <sex>0</sex>
              <world>
                <object refid="${dragon_world_strains}" />
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            </OTOrganism>
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              <world>
                <object refid="${dragon_world_strains}" />
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              <sex>1</sex>
              <world>
                <object refid="${dragon_world_strains}" />
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            <OTOrganism local_id="samplefemale_strain_plates">
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              <sex>1</sex>
              <world>
                <object refid="${dragon_world_strains}" />
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                  <a href="http://about.concord.org/CC-000-000-000-107"><img border="0" width="83" height="65" src="http://concord.org/sites/default/files/images/logos/cc/cc-logo-vertical.jpg"></img></a>
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                  <br />
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                                  Today is a very exciting day on the island of Gandwar. Two dragons 
          there are about to have a baby. Because it happens only about every 
          500 years, the birth of a dragon is met with great anticipation. The 
          lucky parents are Molthwan and Lucenne, two of the island's most 
          admired inhabitants.
                                  <br />
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                                  Like all eager parents, Molthwan and Lucenne are anxious to know 
          what their  baby will be like. Molthwan is especially interested in 
          knowing whether the baby will be born with a fancy spiky or forked tail, a much-admired 
          trait. Lucenne is hoping that the baby will have wings and be able 
          to fly, something not many dragons on Gandwar are able to do.
                                  <br />
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                                      <td>Try breeding some dragons to see if you can figure out any 
                rules that govern which dragons have a fancy tail. Click the "Breed 
                Offspring" buttons as many times as you like.</td>
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                                        <br />
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                                <td>Now see if you can figure out any rules that govern which dragons 
          have wings. Click the button as many times as you like to breed 
          possible children from these pairs.</td>
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                                      <td>Do you have an idea about how wings are inherited? Try the two 
                scenarios below to see if they confirm your suspicions.</td>
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                                  Below is a dragon and its chromosomes. You can control and change 
          the dragon's alleles. Try changing some using the pulldown menus and 
          see what happens. Experiment with the alleles for tails and wings to 
          see if you were correct.
                                  <br />
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                                      <td />
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                                  What other traits can you change on this dragon? Find one trait you 
          think is particularly interesting, and use the button above to take 
          a snapshot for your lab notebook. Use the toolbar to point to or 
          circle the trait, and write a note in your notebook describing how 
          you caused that trait to be expressed. (Note: You can view your 
          notebook at any time by clicking the notebook icon at the lower 
          right.)
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                                  <div class="subtitle">Looking Deeper</div>
                                  You have gained some ideas idea about how tails and wings are 
          inherited in dragons. In the next section, you will look deeper into 
          the genetics of dragons. Use the menu at left to move to the next 
          section.
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                            <p>
                              We've reset things now - are you ready for your challenge? Zoom in on 
      our Daddy dragon.
                              <br />
                              <br />
                              Your goal will be to create a child dragon with 
      wings, but no legs. To inherit these traits, the child will need to have 
      the gene combinations
                              <em>ww</em>
                              and
                              <em>ll</em>
                              .
                              <br />
                              <br />
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                            <p />
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                                  <bodyText>Can the father provide his half of these combinations?</bodyText>
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                            <p>
                              Now reset the meiosis and zoom in on our expectant mother dragon. Run 
      meiosis a few times. (Note that you will have to return to the un-zoomed 
      view and hit "reset" to get a fresh run).
                              <br />
                              <br />
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                                    If we want to "design" a child dragon with the gene combinations
                                    <em>ww</em>
                                    and
                                    <em>ll</em>
                                    , can the mother carry through on her part of the bargain?
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                            <p>
                              If you looked closely, you noticed that we have a problem. The mother can only give chromosomes with 
      the genes
                              <em>Wl</em>
                              or wL. And neither of these will help us in our 
      quest. Fortunately, there's a catch... Zoom in on the mother and press 
      the triangular "play" button again. The process will stop halfway 
      through and wait for you. When it does, click on one chromosome with the 
      tip of your mouse. See the flashing arrows? The arrows show places on 
      other chromosomes you can click. Try it.
                            </p>
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                            <br />
                            <object refid="${snapshot2}" />
                            <p>
                              Congratulations, you just performed a crossover! (This 
      is also called
                              <em>genetic recombination</em>
                              , by the way.) Zoom out to reset 
      things, and try a few more times. Can you create our desired
                              <em>ww</em>
                              and
                              <em>ll</em>
                              dragon now? Give it a shot.
                            </p>
                            <p>
                              When you think you've succeeded (and
                              <strong>before</strong>
                              you proceed to breed the child!), zoom in on the chromosomes you crossed over and take a snapshot for your lab notebook. Write a note to go along with the snapshot describing what you did and why you think it will make the correct child dragon.
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                <OTUDLSection local_id="section-3" name="Pedigree and Genes">
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                          <bodyText>
                            Now that you know how to breed dragons, let's try some selective breeding. 
    This is the pedigree view.
                            <br />
                            <p>Use the cross tool to breed a new generation of dragons. Then breed two of the 
      dragons from this new (F1) generation together. 
      Repeat this as far as you wish. What do you notice about the dragons as you continue to breed more generations this way?</p>
                            <p>Use the chromosome tool to examine the genes of the dragons more closely. Can you find any genes that are different among 
      the members of your F8 generation? How many generations do you have to breed until all the dragons are exactly the same?</p>
                            <!--                            <a href="${pedigreeErbScript}" target="2767fe20-6c7d-11dc-8314-0800200c9a66!/popup_frame">Click Me.</a>
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                            <br />
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                            <br />
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                            <object refid="${clearPedigreeOrganismsButton}" />-->
                            <object refid="${resetPedigreeOrganismsButton}" />
                            <object refid="${snapshot1}" />
                            <p>
                              You are creating an
                              <em>inbred strain</em>
                              of dragons in the last generations of this process. When you think you have succeeded in creating a strain, use the button above to take a snapshot of your strain for your lab notebook. Along with the snapshot, write a note describing your strain, and explain what is special about all individuals in an inbred strain of organisms. Then proceed to the next section.
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                              </target>
                            </OTSnapshotButton>
                            <OTText local_id="pedigreeTextObject" text="This is a text placeholder!" />
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                                <OTWorld id="8a4637f5-651c-11dd-bd45-d9d11cbf97e7" speciesPath="org/concord/biologica/worlds/dragonmarkers.xml" />
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                            </OTOrganism>
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                              <world>
                                <object refid="8a4637f5-651c-11dd-bd45-d9d11cbf97e7" />
                              </world>
                            </OTOrganism>
                            <OTPedigree local_id="firstPedigreeView" height="400" width="400" organismImagesVisible="true" organismImageSize="2" sexTextVisible="true" minimumNumberChildren="3" maximumNumberChildren="3">
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                                <object refid="${samplemale}" />
                                <object refid="${samplefemale}" />
                              </organisms>
                            </OTPedigree>
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                                <object refid="${samplefemale}" />
                              </organisms>
                            </OTMultipleOrganism>
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                              <script>
                                <OTJRuby src="scripts/pedigree_initial_investigation.rb" />
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                                <OTScriptVariableComponent name="pedigreeView">
                                  <reference>
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                                <OTJRuby src="scripts/pedigree_reset_organisms.rb" />
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                                <OTScriptVariableComponent name="pedigreeView">
                                  <reference>
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                                </OTScriptVariableRealObject>
                                <OTScriptVariableRealObject name="startingFemale">
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                            </OTScriptButton>
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                                <OTScriptVariableComponent name="pedigreeView">
                                  <reference>
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                                  <reference>
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                              </scriptVariables>
                            </OTScriptButton>
                            <OTScriptButton local_id="clearPedigreeOrganismsButton" text="Clear all" alwaysReload="false">
                              <script>
                                <OTJRuby src="scripts/multi_org_clear_button.rb" />
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                              <scriptVariables>
                                <OTScriptVariableComponent name="multiOrgView">
                                  <reference>
                                    <object refid="${multipleOrganismView}" />
                                  </reference>
                                </OTScriptVariableComponent>
                              </scriptVariables>
                            </OTScriptButton>
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                              <action>
                                <object refid="${show_pedigree_frame}" />
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                            </OTButton>
                            <OTFrameDisplayAction local_id="show_pedigree_frame">
                              <frame>
                                <OTFrame local_id="popup_frame" width="500" height="500" />
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                <OTUDLSection local_id="section-4" name="The Plates Problem">
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                            <div class="buffer">
                              <div class="border">
                                <div class="body">
                                  Some traits are less obvious than others. Here is a dragon with 
          spiky plates on her upper neck. Try changing the chromosomes and see 
          what happens.
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                                    <tr>
                                      <td width="20%">
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                              <div class="border">
                                <div class="body">
                                  <div class="subtitle">Breeding Test Area</div>
                                  Try breeding some offspring to see what crosses between these strains produce. Does the inheritance of the plates tell you anything useful?
                                  <br />
                                  <table>
                                    <tr>
                                      <td>
                                        <table>
                                          <tr>
                                            <td align="left">
                                              <object refid="${breedOffspringViewForStrains}" editable="true" />
                                            </td>
                                          </tr>
                                          <tr>
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                                              <br />
                                              <object refid="${strainMultipleOrganismScript}" />
                                              <object refid="${multiOrgClearButton}" />
                                              <br />
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                                          </tr>
                                        </table>
                                      </td>
                                      <td>
                                        <table>
                                          <tr>
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                                              <br />
                                              <object refid="${multiOrgSaveFamilyButton}" />
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                                <OTOrganism local_id="maleStrainOrganism-plates" chromosomesColor="-10066177">
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                                  <sex>0</sex>
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                                  </world>
                                  <alleles>b:P,a:p,b:h,a:H,b:S,a:S,b:W,a:w,b:L,a:l,b:t,a:t,a:f,a:A,a:B</alleles>
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                            <OTBreedOffspring local_id="strain_breedoffspring">
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                              <fatherOrganism>
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                              </mother>
                            </OTFamily>
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                              <script>
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                              <scriptVariables>
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                                <OTScriptVariableComponent name="multiOrgView2">
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                                  <bodyText>Try breeding some more dragons here. Based on breeding this pair, what pattern or patterns do you notice in dragons that have plates?</bodyText>
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                                    The gene for plates is still undiscovered, but your experiments may 
            have helped you narrow down its location.
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                                  <bodyText>Based on your breeding experiments, where do you think the gene for plates is located? (Hint: If you don't have a snapshot of the dragon chromosomes, you can use the chromosome tool to examine one of the dragons above.)</bodyText>
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                                    The Power of Prediction
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                                  The existence of horns on a dragon can be a genetic
                                  <i>marker</i>
                                  for 
          the tendency to grow plates. This means that the gene for horns is 
          an indicator of where the gene for plates is located.
                                  <br />
                                  <br />
                                  Plates 
          are a trait that grow in and become visible after a while. Diseases 
          may not be obvious until it's too late, however. Narrowing the gene 
          location for a genetic disease down to a chromosome and then 
          pinpointing its precise location can be serious business, as you 
          will soon learn.
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                                  Continue to the next activity to find out more...
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                        <div class="title">Section 4</div>
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