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                  <div class="activity-title">GENIQUEST</div>
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                                  Today is a very exciting day on the island of Gandwar. Two dragons 
          there are about to have a baby. Because it happens only about every 
          500 years, the birth of a dragon is met with great anticipation. The 
          lucky parents are Molthwan and Lucenne, two of the island’s most 
          admired inhabitants.
                                  <br />
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                                  Like all eager parents, Molthwan and Lucenne are anxious to know 
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          knowing whether the baby will have horns, a much-admired 
          trait. Lucenne is hoping that the baby will have wings and be able 
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                                  <br />
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                                      <td>Try breeding some dragons to see if you can figure out any 
                rules that govern which dragons have horns.</td>
                                    </tr>
                                    <tr>
                                      <td>
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                                    <tr>
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                                        <br />
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                                <td>Now try breeding some dragons to see if you can figure out any rules 
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                                      <td>Do you have an idea about how wings are inherited? Try the two 
                scenarios below to see if they confirm your suspicions.</td>
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                                  <div class="subtitle">Looking Deeper</div>
                                  You have an idea about how horns and wings are inherited. In the 
          next section, you will look deeper into the genetics of dragons to 
          determine whether you were correct.
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                                  Below is a dragon and its chromosomes. You can control and change the dragon's genes. 
Try changing some of the genes and see what happens. Experiment with the genes for horns and wings to see if you were correct.
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                            Below you can see Molthwan and Lucenne's germ cells. By pressing the 
    triangular play button, you can cause the cells to undergo meiosis. Click 
    on the magnifying glass to zoom the views in for a closer look.
                            <br />
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                              When both dragons have undergone meiosis, you can combine two gametes 
      and fertilize them to create a child. Click one of the four gametes 
      under each dragon and use the arrow buttons to move them into the 
      middle. Before you click play to run fertilization, zoom in with the 
      magnifying glass. Can you predict how the child will look just by 
      examining the genes?
                              <em>(Note: You can click and drag the chromosomes 
      to separate them for a better look.)</em>
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                            <p>
                              Now zoom in on Molthwan, our Daddy dragon. Your goal will be to create a 
      child dragon with wings, but no legs. To inherit these traits, the child 
      will need to have the gene combinations
                              <em>ww</em>
                              and
                              <em>ll</em>
                              .
                            </p>
                            <p>
                              Can Molthwan provide his half of these combinations?
                              <br />
                              <br />
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                            <p />
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                          <bodyText>
                            <p>Now reset the meiosis and zoom in on Lucenne, our expectant mother 
      dragon. Run meiosis a few times. (Note that you will have to return to 
      the un-zoomed view and hit "reset" to get a fresh run).</p>
                            <p>
                              If we want to "design" a child dragon with the gene combinations
                              <em>ww</em>
                              and
                              <em>ll</em>
                              , can Lucenne carry through on her part of the bargain?
                              <br />
                              <br />
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                            <p>
                              You're right: we have a problem. Lucenne can only give chromosomes with 
      the genes
                              <em>Wl</em>
                              or wL. And neither of these will help us in our 
      quest. Fortunately, there's a catch… Zoom in on Lucenne and press 
      the triangular "play" button again. The process will stop halfway 
      through and wait for you. When it does, click on one chromosome with the 
      tip of your mouse. See the flashing arrows? The arrows show places on 
      other organisms you can click. Try it.
                            </p>
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                            <br />
                            <p>
                              Congratulations, you just created a child by crossing genes over! (This 
      is also called genetic recombination, by the way.) Zoom out to reset 
      things, and try a few more times. Can you create our designer
                              <em>ww</em>
                              and
                              <em>ll</em>
                              dragon now? Give it a shot.
                            </p>
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                          <bodyText>
                            Now that you know how to breed dragons, let's try some selective breeding. 
    This is the pedigree view.
                            <br />
                            <object refid="${pedigreeButton}" />
                            <br />
                            <!--You have just created a new generation of dragons. Now breed two of the 
      dragons (one circle and one square) from this generation together. 
      Repeat this five more times, until you get to generation F8. Using the 
      pulldown menu at the upper left, change the menu until it reads "Legs." 
      What do you notice as you scroll through the generations? At which 
      generation do all the dragons all begin having the same traits?</p>
                            <p>Using the pulldown menu to select different traits, scroll through the 
      dragons you have bred. Can you find any traits that are different among 
      the members of your F8 generation?</p>
                            <p>
                              You have just created a
                              <em>strain</em>
                              of dragons. If you take any 
      dragon from the pool, you can be guaranteed that it will have the same 
      traits as any other dragon.
                              <br />
-->
                            <a href="${pedigreeErbScript}" target="2767fe20-6c7d-11dc-8314-0800200c9a66!/popup_frame">Click Me.</a>
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                                <OTScriptVariableComponent name="multiOrgView">
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                            </OTButton>
                            <OTFrameDisplayAction local_id="show_pedigree_frame">
                              <frame>
                                <OTFrame local_id="popup_frame" width="500" height="500" />
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                                <object refid="${multipleOrganismView}" />
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                                  <bodyText>Describe what a dragon from your F8 generation would look like.</bodyText>
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                          <bodyText>
                            Here is a dragon and his chromosomes. Try clicking on one of the red genes 
    and watch what appears below.
                            <br />
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                            What 
    happens if you click on on the DNA itself and use your keyboard to insert, 
    delete or change letters? Can you find the gene that controls horns and 
    change it? What happens?
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                            <div class="buffer">
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                                <div class="body">
                                  <div class="subtitle">Breeding Test Area</div>
                                  Try breeding some offspring to see what crosses between these strains produce.
                                  <br />
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                                    <tr>
                                      <td>
                                        <table>
                                          <tr>
                                            <td align="left">
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                                            </td>
                                          </tr>
                                          <tr>
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                                              <object refid="${multipleOrganismViewForStrains}" />
                                              <br />
                                              <object refid="${strainMultipleOrganismScript}" />
                                              <object refid="${multiOrgClearButton}" />
                                              <br />
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                                          </tr>
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                                      </td>
                                      <td>
                                        <table>
                                          <tr>
                                            <td>
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                                              <br />
                                              <object refid="${multiOrgSaveFamilyButton}" />
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                                      </td>
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                          </bodyText>
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                            </OTMultipleOrganism>
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                              <fatherOrganism>
                                <OTOrganism local_id="maleStrainOrganism">
                                  <name>male</name>
                                  <sex>0</sex>
                                  <world>
                                    <OTWorld local_id="dragon_world_strains" speciesPath="org/concord/biologica/worlds/dragonmarkers_plates_test.xml" />
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                                  <alleles>b:h,a:h,b:S,a:S,b:W,a:w,b:L,a:l,b:t,a:t,a:p,a:f,a:a,a:B</alleles>
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                              </fatherOrganism>
                              <motherOrganism>
                                <OTOrganism local_id="femaleStrainOrganism">
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                            <OTBreedOffspring local_id="strain_breedoffspring">
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                              <fatherOrganism>
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                                <OTScriptVariableComponent name="strainFamily">
                                  <reference>
                                    <OTFamily local_id="strainFamily">
                                      <father>
                                        <object refid="${maleStrainOrganism}" />
                                      </father>
                                      <mother>
                                        <object refid="${femaleStrainOrganism}" />
                                      </mother>
                                    </OTFamily>
                                  </reference>
                                </OTScriptVariableComponent>
                                <OTScriptVariableComponent name="breedOffspringView">
                                  <reference>
                                    <object refid="${breedOffspringViewForStrains}" />
                                  </reference>
                                </OTScriptVariableComponent>
                                <OTScriptVariableComponent name="multiOrgView">
                                  <reference>
                                    <object refid="${multipleOrganismViewForStrains}" />
                                  </reference>
                                </OTScriptVariableComponent>
                                <OTScriptVariableComponent name="multiOrgView2">
                                  <reference>
                                    <object refid="${multipleOrganismViewTransfer}" />
                                  </reference>
                                </OTScriptVariableComponent>
                              </scriptVariables>
                            </OTScriptButton>
                            <OTScriptButton local_id="moveUp" text="/\" alwaysReload="false">
                              <script>
                                <OTJRuby src="scripts/multi_org_move_up_button.rb" />
                              </script>
                              <scriptVariables>
                                <OTScriptVariableComponent name="multiOrgView">
                                  <reference>
                                    <object refid="${multipleOrganismViewTransfer}" />
                                  </reference>
                                </OTScriptVariableComponent>
                              </scriptVariables>
                            </OTScriptButton>
                            <OTScriptButton local_id="moveDown" text="\/" alwaysReload="false">
                              <script>
                                <OTJRuby src="scripts/multi_org_move_down_button.rb" />
                              </script>
                              <scriptVariables>
                                <OTScriptVariableComponent name="multiOrgView">
                                  <reference>
                                    <object refid="${multipleOrganismViewTransfer}" />
                                  </reference>
                                </OTScriptVariableComponent>
                              </scriptVariables>
                            </OTScriptButton>
                          </documentRefs>
                        </OTUDLCompoundDoc>
                        <OTUDLCompoundDoc id="b6e29e26-83ef-11dd-9e23-eb01b8e568e2" name="%b6e29e26-83ef-11dd-9e23-eb01b8e568e2" showEditBar="true" showDefinitions="true">
                          <bodyText>
                            <div class="buffer">
                              <div class="border">
                                <div class="body">
                                  <table>
                                    <tr>
                                      <!--																		<td width="150">
																			<object refid="${multipleOrganismViewTransferPlaceholder}" />
																		</td>
-->
                                      <td>
                                        <table>
                                          <tr>
                                            <td>
                                              <object refid="${samplemale_strain_static}" />
                                              <object refid="${samplemale_strain_chromzoom}" />
                                            </td>
                                          </tr>
                                          <tr>
                                            <td>
                                              <object refid="${samplemale_strain_plates_static}" />
                                              <object refid="${samplemale_strain_plates_chromzoom}" />
                                            </td>
                                          </tr>
                                          <tr>
                                            <td>
                                              <object refid="${samplefemale_strain_plates_static}" />
                                              <object refid="${samplefemale_strain_plates_chromzoom}" />
                                            </td>
                                          </tr>
                                          <tr>
                                            <td>
                                              <object refid="${samplefemale_strain_static}" />
                                              <object refid="${samplefemale_strain_chromzoom}" />
                                            </td>
                                          </tr>
                                        </table>
                                      </td>
                                    </tr>
                                  </table>
                                </div>
                              </div>
                            </div>
                          </bodyText>
                          <documentRefs>
                            <!--														<OTMultipleOrganism local_id="multipleOrganismViewTransferPlaceholder" width="150" height="400" organismImageSize="2">
								              <organisms>
								                <object refid="${samplemale_strain}" />
								                <object refid="${samplemale_strain_plates}" />
								                <object refid="${samplefemale_strain_plates}" />
								                <object refid="${samplefemale_strain}" />
								              </organisms>
								            </OTMultipleOrganism>
-->
                            <OTStaticOrganism local_id="samplemale_strain_static">
                              <organism>
                                <object refid="${samplemale_strain}" />
                              </organism>
                            </OTStaticOrganism>
                            <OTStaticOrganism local_id="samplemale_strain_plates_static">
                              <organism>
                                <object refid="${samplemale_strain_plates}" />
                              </organism>
                            </OTStaticOrganism>
                            <OTStaticOrganism local_id="samplefemale_strain_plates_static">
                              <organism>
                                <object refid="${samplefemale_strain_plates}" />
                              </organism>
                            </OTStaticOrganism>
                            <OTStaticOrganism local_id="samplefemale_strain_static">
                              <organism>
                                <object refid="${samplefemale_strain}" />
                              </organism>
                            </OTStaticOrganism>
                            <OTChromosomeZoom local_id="samplemale_strain_chromzoom">
                              <organism>
                                <object refid="${samplemale_strain}" />
                              </organism>
                            </OTChromosomeZoom>
                            <OTChromosomeZoom local_id="samplemale_strain_plates_chromzoom">
                              <organism>
                                <object refid="${samplemale_strain_plates}" />
                              </organism>
                            </OTChromosomeZoom>
                            <OTChromosomeZoom local_id="samplefemale_strain_plates_chromzoom">
                              <organism>
                                <object refid="${samplefemale_strain_plates}" />
                              </organism>
                            </OTChromosomeZoom>
                            <OTChromosomeZoom local_id="samplefemale_strain_chromzoom">
                              <organism>
                                <object refid="${samplefemale_strain}" />
                              </organism>
                            </OTChromosomeZoom>
                          </documentRefs>
                        </OTUDLCompoundDoc>
                        <OTUDLCompoundDoc id="b9f387a7-83ef-11dd-9e23-eb01b8e568e2" name="%b9f387a7-83ef-11dd-9e23-eb01b8e568e2" showEditBar="true" showDefinitions="true">
                          <bodyText>
                            <div class="buffer">
                              <div class="border">
                                New QTL test page
                                <!--																<object refid="${samplefemale_strain_plates_static}" /> -->
                                <object refid="${QTL_simulation}" />
                                <br />
                                <object refid="${QTL_scan_graph}" />
                                <br />
                                <object refid="${QTL_test_page_text_field}" />
                                <br />
                                <!--																<object refid="${moz-swing}" /> -->
                                <object refid="${QTL_link_script}" />
                              </div>
                            </div>
                          </bodyText>
                          <documentRefs>
                            <OTText local_id="QTL_test_page_text_field" />
                            <OTScriptButton local_id="QTL_link_script" text="Evaluate Script" alwaysReload="true">
                              <script>
                                <OTJRuby src="scripts/qtl_link_script.rb" />
                              </script>
                              <scriptVariables>
                                <OTScriptVariableView name="QTLSimulation">
                                  <reference>
                                    <object refid="${QTL_simulation}" />
                                  </reference>
                                </OTScriptVariableView>
                                <OTScriptVariable name="textField">
                                  <reference>
                                    <object refid="${QTL_test_page_text_field}" />
                                  </reference>
                                </OTScriptVariable>
                                <OTScriptVariable name="QTLGraph">
                                  <reference>
                                    <object refid="${QTL_scan_graph}" />
                                  </reference>
                                </OTScriptVariable>
                                <OTScriptVariableView name="QTLGraphView">
                                  <reference>
                                    <object refid="${QTL_scan_graph}" />
                                  </reference>
                                </OTScriptVariableView>
                              </scriptVariables>
                            </OTScriptButton>
                            <OTMozSwing local_id="moz-swing" showToolbar="true" />
                            <OTQTLSimulation local_id="QTL_simulation" numberOfIndividuals="200" numberOfMarkersPerChromosome="200">
                              <chromosomeLengths>
                                <int>100</int>
																<int>100</int>
                              </chromosomeLengths>
                              <thresholdValues>
                                <double>0.01</double>
                                <double>0.10</double>
                                <double>0.35</double>
                              </thresholdValues>
                              <locations>
                                <OTQTL chromosome="1" locationInCM="24.0" additiveEffect="0.48" dominanceDeviation="-0.5" />
                              </locations>
                              <dataGraph>
                                <object refid="${QTL_scan_graph}" />
                              </dataGraph>
                            </OTQTLSimulation>
                            <OTDataGraph local_id="QTL_scan_graph" name="LOD Scores">
                              <xDataAxis>
                                <OTDataAxis min="0.0" max="100.0" label="Position" units="cM" />
                              </xDataAxis>
                              <yDataAxis>
                                <OTDataAxis min="-0.0" max="12.629056" label="LOD" units="" />
                              </yDataAxis>
                            </OTDataGraph>
                            <OTScriptButton local_id="QTL_test_button" text="Run QTL sample scan" alwaysReload="true">
                              <script>
                                <OTJRuby src="scripts/QTL_test_scan.rb" />
                              </script>
                              <scriptVariables>
                                <OTScriptVariableComponent name="QTLMother">
                                  <reference>
                                    <object refid="${samplefemale_strain_plates_static}" />
                                  </reference>
                                </OTScriptVariableComponent>
                              </scriptVariables>
                            </OTScriptButton>
                          </documentRefs>
                        </OTUDLCompoundDoc>
                      </cards>
                      <currentCard>
                        <object refid="b6e29e26-83ef-11dd-9e23-eb01b8e568e2" />
                      </currentCard>
                      <viewedCards>
                        <object refid="f69b9731-79bb-11dd-b6e3-bdb383ed1215" />
                        <object refid="170b4e9a-7b50-11dd-8304-0bc503599a8b" />
                        <object refid="b6e29e26-83ef-11dd-9e23-eb01b8e568e2" />
                        <object refid="b9f387a7-83ef-11dd-9e23-eb01b8e568e2" />
                      </viewedCards>
                    </OTCardContainer>
                  </content>
                  <header>
                    <OTUDLCompoundDoc id="f69b9733-79bb-11dd-b6e3-bdb383ed1215" name="%f69b9733-79bb-11dd-b6e3-bdb383ed1215" showEditBar="true">
                      <bodyText>
                        <div class="title">Section 4</div>
                      </bodyText>
                    </OTUDLCompoundDoc>
                  </header>
                  <footer>
                    <OTUDLCompoundDoc id="f69b9734-79bb-11dd-b6e3-bdb383ed1215" name="%f69b9734-79bb-11dd-b6e3-bdb383ed1215" showEditBar="true">
                      <bodyText>
                        <div align="center">
                          <table>
                            <tr>
                              <td>
                                <object refid="f69cf6c5-79bb-11dd-b6e3-bdb383ed1215" viewid="29dc5ef0-c453-11dc-95ff-0800200c9a66" />
                              </td>
                            </tr>
                          </table>
                        </div>
                      </bodyText>
                      <documentRefs>
                        <OTUDLMenu id="f69cf6c5-79bb-11dd-b6e3-bdb383ed1215">
                          <cardContainer>
                            <object refid="f69b9732-79bb-11dd-b6e3-bdb383ed1215" />
                          </cardContainer>
                          <menuRule>
                            <object refid="${page-rule}" />
                          </menuRule>
                        </OTUDLMenu>
                        <object refid="29dc5ef0-c453-11dc-95ff-0800200c9a66" />
                      </documentRefs>
                    </OTUDLCompoundDoc>
                  </footer>
                  <north>
                    <object refid="f69b9733-79bb-11dd-b6e3-bdb383ed1215" />
                  </north>
                  <center>
                    <object refid="f69b9732-79bb-11dd-b6e3-bdb383ed1215" />
                  </center>
                  <south>
                    <object refid="f69b9734-79bb-11dd-b6e3-bdb383ed1215" />
                  </south>
                </OTUDLSection>
                <OTUDLSection id="bcc4f728-83ef-11dd-9e23-eb01b8e568e2" name="Section 5">
                  <content>
                    <OTCardContainer id="bcc4f72a-83ef-11dd-9e23-eb01b8e568e2" contentsMayScroll="true" loadViewOnlyOnDemand="true">
                      <cards>
                        <OTUDLCompoundDoc id="bcc4f729-83ef-11dd-9e23-eb01b8e568e2" showDefinitions="false">
                          <bodyText>
                            <div class="buffer">
                              <div class="border">
                                <div class="body">
                                  <div class="subtitle">New page</div>
                                  New page content
                                </div>
                              </div>
                            </div>
                          </bodyText>
                        </OTUDLCompoundDoc>
                        <OTUDLCompoundDoc id="be1d0d1e-83ef-11dd-9e23-eb01b8e568e2" name="%be1d0d1e-83ef-11dd-9e23-eb01b8e568e2" showEditBar="true" showDefinitions="false">
                          <bodyText>
                            <div class="buffer">
                              <div class="border">
                                <div class="body">
                                  <div class="subtitle">New page</div>
                                  New page content
                                </div>
                              </div>
                            </div>
                          </bodyText>
                        </OTUDLCompoundDoc>
                      </cards>
                      <currentCard>
                        <object refid="be1d0d1e-83ef-11dd-9e23-eb01b8e568e2" />
                      </currentCard>
                      <viewedCards>
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                        <object refid="be1d0d1e-83ef-11dd-9e23-eb01b8e568e2" />
                      </viewedCards>
                    </OTCardContainer>
                  </content>
                  <header>
                    <OTUDLCompoundDoc id="bcc4f72b-83ef-11dd-9e23-eb01b8e568e2" name="%bcc4f72b-83ef-11dd-9e23-eb01b8e568e2" showEditBar="true">
                      <bodyText>
                        <div class="title">Section 5</div>
                      </bodyText>
                    </OTUDLCompoundDoc>
                  </header>
                  <footer>
                    <OTUDLCompoundDoc id="bcc4f72c-83ef-11dd-9e23-eb01b8e568e2" name="%bcc4f72c-83ef-11dd-9e23-eb01b8e568e2" showEditBar="true">
                      <bodyText>
                        <div align="center">
                          <table>
                            <tr>
                              <td>
                                <object refid="bcc6089d-83ef-11dd-9e23-eb01b8e568e2" viewid="29dc5ef0-c453-11dc-95ff-0800200c9a66" />
                              </td>
                            </tr>
                          </table>
                        </div>
                      </bodyText>
                      <documentRefs>
                        <OTUDLMenu id="bcc6089d-83ef-11dd-9e23-eb01b8e568e2">
                          <cardContainer>
                            <object refid="bcc4f72a-83ef-11dd-9e23-eb01b8e568e2" />
                          </cardContainer>
                          <menuRule>
                            <object refid="${page-rule}" />
                          </menuRule>
                        </OTUDLMenu>
                        <object refid="29dc5ef0-c453-11dc-95ff-0800200c9a66" />
                      </documentRefs>
                    </OTUDLCompoundDoc>
                  </footer>
                  <north>
                    <object refid="bcc4f72b-83ef-11dd-9e23-eb01b8e568e2" />
                  </north>
                  <center>
                    <object refid="bcc4f72a-83ef-11dd-9e23-eb01b8e568e2" />
                  </center>
                  <south>
                    <object refid="bcc4f72c-83ef-11dd-9e23-eb01b8e568e2" />
                  </south>
                </OTUDLSection>
              </cards>
              <currentCard>
                <object refid="f69b7020-79bb-11dd-b6e3-bdb383ed1215" />
              </currentCard>
              <viewedCards>
                <object refid="${section_1}" />
                <object refid="3bac2cae-64f4-11dd-88f8-3390a456ed3b" />
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                <object refid="bcc4f728-83ef-11dd-9e23-eb01b8e568e2" />
              </viewedCards>
            </OTCardContainer>
          </content>
          <script>
            <OTScriptObject>
              <variables>
                <OTScriptVariable name="cardContainer">
                  <reference>
                    <object refid="${section-card-container}" />
                  </reference>
                </OTScriptVariable>
                <OTScriptVariable name="system">
                  <reference>
                    <object refid="${system}" />
                  </reference>
                </OTScriptVariable>
                <OTScriptVariable name="menuPageRule">
                  <reference>
                    <object refid="${page-rule}" />
                  </reference>
                </OTScriptVariable>
                <OTScriptVariable name="sampleMenu">
                  <reference>
                    <object refid="${menu}" />
                  </reference>
                </OTScriptVariable>
                <OTScriptVariable name="menuHorizontalView">
                  <reference>
                    <object refid="29dc5ef0-c453-11dc-95ff-0800200c9a66" />
                  </reference>
                </OTScriptVariable>
              </variables>
              <script>
                <object refid="${authoring_script.js}" />
              </script>
              <scriptState />
            </OTScriptObject>
          </script>
        </OTUDLContainer>
      </root>
      <library>
        <OTUDLMenu local_id="menu">
          <cardContainer>
            <object refid="${section-card-container}" />
          </cardContainer>
          <menuRule>
            <object refid="${section-rule}" />
          </menuRule>
          <css>
            <object refid="31193bb0-c44f-11dc-95ff-0800200c9a66" />
          </css>
        </OTUDLMenu>
        <OTUDLMenu local_id="section-1-menu">
          <cardContainer>
            <object refid="${section-1-card-container}" />
          </cardContainer>
          <menuRule>
            <object refid="${page-rule}" />
          </menuRule>
        </OTUDLMenu>
        <OTSnapshotAlbum local_id="album" />
        <OTDefinitionManager local_id="definition-manager">
          <definitions>
            <OTDefinitionList src="../LOOPS/glossary/common-glossary.txt" />
          </definitions>
          <frame>
            <OTFrame local_id="definition_frame" width="300" height="190" borderlessPopup="true" />
          </frame>
        </OTDefinitionManager>
        <OTUDLMenuRule local_id="page-rule" jumpToViewedCard="true" stepAhead="true" />
        <OTUDLMenuRule local_id="section-rule" jumpToAnyCard="true" />
        <OTJavascript local_id="change_page.js" src="../LOOPS/scripts/change_page.js" />
        <OTJavascript local_id="show_message.js" src="../LOOPS/scripts/show_message.js" />
        <OTJavascript local_id="authoring_script.js" src="../LOOPS/scripts/authoring_script.js" />
      </library>
    </OTSystem>
  </objects>
</otrunk>

